ctdcal.process_bottle

Library to create SBE .btl equivalent files. TODO: allow for variable bottle fire scans instead of SBE standard 36

ex: user doesn’t know how to change the config for the cast to add more scans, instead does it post-cast?

Joseph Gum SIO/ODF Nov 7, 2016

Functions

add_btlnbr_cols	Initialize bottle number column and initialize WOCE bottle flags.
bottle_mean	Compute the mean for each bottle from a dataframe.
bottle_median	Compute the median for each bottle from a dataframe.
export_hy1	Write out the exchange-lite formatted hy1 bottle file.
export_report_data	Write out the data used for report generation as a csv.
load_all_btl_files	Load bottle and secondary (e.g. reference temperature, bottle salts, bottle oxygen) files for station/cast list and merge into a dataframe.
load_hy_file	Read in an exchange-formatted bottle file as a Pandas DataFrame.
process_reft	SBE35 reference thermometer processing function.
retrieveBottleData	Retrieve the bottle data from a dataframe created from a converted file.
retrieveBottleDataFromFile	Retrieve the bottle data from a converted file.